Community Profile

photo

Jim Bosley


Clermont, Bosley LLC

Last seen: 20 dagen ago |  Active since 2017

Contact

Statistics

  • Thankful Level 4
  • First Answer

View badges

Content Feed

View by

Question


Any progress on relaxing the constraints on species units?
In SimBiology, there is a limited set of units one case use. Amount, or concentration. This is often inconvenient, as (for ex...

4 maanden ago | 1 answer | 0

1

answer

Answered
Matlab unable to install R2021b: "unable to write to selected folder" in Ubuntu 20.04
A bit more detail - thanks to Philip (see above) for the answer. Apparently in a terminal window you must run xhost +SI:localu...

5 maanden ago | 6

| accepted

Question


Matlab unable to install R2021b: "unable to write to selected folder" in Ubuntu 20.04
Trying to install R2021b on the system drive. Using Ubuntu 20.04. 384 Gb available. I download matlab_R2020b_glnxa64.zip an...

5 maanden ago | 1 answer | 1

1

answer

Question


Is there any way to export a simbiology model diagram in high resolution?
I have a fairly large and complex simbiology model. I'd like to export the graphical model diagram in a presentation quality ti...

5 maanden ago | 1 answer | 0

1

answer

Question


When will sbmlimport support sbml level 3?
Would be useful to know. I believe 2020b only supports level 2, correct? Has anyone else run into having to use an sblm level ...

meer dan een jaar ago | 1 answer | 0

1

answer

Question


Semicolons in SimBiology species names: just characters, or functionally active?
I was looking at Sven Mesecke's implementation of the Renin Angiotensin Aldosterone System model of Lo et al. 2011. (For those ...

bijna 2 jaar ago | 1 answer | 0

1

answer

Question


Any simulation speed differences between models loaded with SimBiology() vs sbioloadproject?
The question is in the title. I haven't seen much difference in numerical efficiency between the same model opened in sbioloadpr...

ongeveer 2 jaar ago | 1 answer | 0

1

answer

Question


Namespace and other html / xml information in SimBiology Notes
Simbiology notes allows (requires?) one to use html for nicely formatted notes. For normal documentation use, where there will b...

meer dan 2 jaar ago | 1 answer | 0

1

answer

Question


Constant parameter setting throws error, or... if I don't set a parameter to constant, but don't change it, does it stay constant?
In another thread, I asked about using subject- (group- in SimBiology) dependent parameter values to allow fitting of one part o...

meer dan 2 jaar ago | 1 answer | 0

1

answer

Answered
Icons for pinned SimBiology(R) graphics
Repeating as a partial answer: As to the last point, found this: Simbiology / Preferences / Indicators Show indicator when a ...

meer dan 2 jaar ago | 0

| accepted

Question


Icons for pinned SimBiology(R) graphics
When building models graphically usign the dashboard, one can pin graphical elements. This prevents inadvertently messing up a c...

meer dan 2 jaar ago | 1 answer | 0

1

answer

Question


deleting or removing variant using variant array handle gives unexpected results.
If I have a variable that contains a SimBiology parameter object, and I change it, the object reflects that change: par1 = addp...

meer dan 2 jaar ago | 1 answer | 0

1

answer

Question


Can I force Matlab to wait 'til it finishes one command to run another?
I have a script that loads a SimBiology model using the simbiology() command. Then I try to get a handle for the model simbiol...

meer dan 2 jaar ago | 1 answer | 0

1

answer

Answered
Is it possible to get the group (that is the subject) number in sbiofit to do a lookup?
One last thing. I tested using the group to set parameters. Works fine. So a repeat assignment rule is just pv = setparvalu(...

meer dan 2 jaar ago | 0

Question


sbiofitmixed/ nlmefit and weighting two dependent variables
I am fitting a trial with two output measurements (for now). These are CONC1 and CONC2. Supposing that they have very differen...

meer dan 2 jaar ago | 0 answers | 0

0

answers

Answered
Is it possible to get the group (that is the subject) number in sbiofit to do a lookup?
Jérémy Glad if the ideas help. I enjoy the interactions with you, Arthur, Pax, and others on your team. I just want to clarif...

meer dan 2 jaar ago | 0

Question


How can I plot only one fitted variable after using sbiofit?
I'm fitting a model to a dataset. I have two variables I'm fitting simultaneously: the therapy, and the quantity of an endogeno...

meer dan 2 jaar ago | 2 answers | 0

2

answers

Question


Is it possible to get the group (that is the subject) number in sbiofit to do a lookup?
If I'm fitting using lsqnonlin, is there a matlab script function that returns the group number? The idea is to allow use of co...

bijna 3 jaar ago | 3 answers | 0

3

answers

Question


Fitting multiple dependent variables with time less than zero
Suppose I have a therapeutic d that modulates an endogenous substance e. I've a pd model of e (for the sake of argument, a cons...

bijna 3 jaar ago | 1 answer | 0

1

answer

Question


The order of plotted things vs the order of the legend
I'm using patch to show a confidence interval in a matlab plot as a colored region. Assume vectors of time values, tv, and mean...

bijna 3 jaar ago | 1 answer | 0

1

answer

Question


Is there an object associated with simulate task in the simbiology desktop that contains the name of the task?
I use State_Subplots in "Plots to Generate" in simbiology simulation tasks a lot. "Plots to Generate" allows scripts to be used...

ongeveer 3 jaar ago | 1 answer | 0

1

answer

Answered
How To Clear Java Heap Space Memory????
jonathan wrote: "years are passing on this one folks. hello? Mathworks please address this." I'm thinking that maybe eight year...

ongeveer 3 jaar ago | 0

Question


nlme fitting error for covariate in popPK model
I select a column (WT) in my dataset as a covariate. When I set up the covariate in the nlme fitting page (interactively, not ...

meer dan 3 jaar ago | 1 answer | 0

1

answer

Question


Can I create a variant that captures all current parameter, species and compartment values?
So I'd like to be able to do something like this: sbr = sbioroot; % Get the root object lastn = length(sbr.m...

meer dan 3 jaar ago | 1 answer | 0

1

answer

Question


Not finding info on arrays of variant objects
The help page on <https://www.mathworks.com/help/simbio/ref/variantobject.html?searchHighlight=variant%2520array&s_tid=doc_srcht...

meer dan 3 jaar ago | 1 answer | 0

1

answer

Question


Better understanding of variants sought (also project files)
If I create a model using the dashboard, including variants(suppose 2, 'var1', and 'var2'), and save the model, the variants are...

meer dan 3 jaar ago | 1 answer | 0

1

answer

Question


Could Simbiology simulations have a preload function?
In Simulink, one can write preload scripts that run upon opening a model or upon any number of other actions. In Simbiology...

bijna 4 jaar ago | 1 answer | 0

1

answer

Answered
How To Clear Java Heap Space Memory????
This error kept me from publishing completed work. That is, Matlab did the analysis, but publish could not complete for the scri...

bijna 4 jaar ago | 1

Question


Dimensional analysis with math functions flags a warning
I'm getting a warning when I run with dimensional analysis. _ *Cannot perform dimensional analysis for rule 'rule_13' becau...

ongeveer 4 jaar ago | 1 answer | 0

1

answer

Answered
Shorthand for sbioselect/set
So I decided to write the code and am embarrassed with how simple it is. But a question arose. Here's the code: function ...

ongeveer 4 jaar ago | 0

Load more