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Ive J


Last seen: 9 dagen ago Active since 2013

Computational biologist.

Programming Languages:
Python, R, MATLAB
Spoken Languages:
English

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  • 6 Month Streak
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Answered
How does fsrftest calculate the p-value?
At the end of doc you can see it uses -log(p) to rank features, so there is no significance level here. And yes, it's same as AN...

ongeveer 2 maanden ago | 0

| accepted

Answered
How to do linear fitting of data to get R square value and coeficient of a,b ?
n = 100; x = randn(n, 1); y = randn(n, 1); mdl = fitlm(x, y)

3 maanden ago | 0

Answered
Adding String to end of an Matrix
wordlist = strings(3, 1); for n = 1:3 wordlist(n) = input("Word: ","s"); end

3 maanden ago | 0

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Answered
Applying SHAP on a Reinforcement Learning Algorithm
Document and refs are clear enough if you're aware enough what your intentions are. Follow this example if you're interested to ...

3 maanden ago | 0

Answered
Importance of predictors within an Optimizable GPR model
It's almost always good to look at both local and global levels. In case of lime or SHAP, you can calculate on a random subset o...

6 maanden ago | 0

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Answered
Linear and Logistic Regressions to control for a possible confouding variable
whether or not should you adjust for some covariates in your model heavily depends on your understaind of the matter you study. ...

6 maanden ago | 0

Answered
a philosophical question regarding function (how many tasks should be wrapped inside a function?)
Assuming you're gonna stick with those variable names, you can do somethig like this: T1 = array2table(["matlab 101"; "C++ 20...

9 maanden ago | 0

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Answered
.MAT file with multiple tabs/sheets
you can do something like this, and write each sheet to fields of a structure: snames = sheetnames("myfile.xlsx"); out = s...

9 maanden ago | 1

Answered
Why does meanEffectSize() use sqrt((varX + varY)/2) for the paired cohensD calculation?
I assume you mean (check more flavors in this paper): x = [10 12 15 8 11]; y = [14 18 16 12 13]; d = mean(x-y)/std(x-y) ...

9 maanden ago | 1

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Answered
Multioutput Regression models in MATLAB
I'm not aware of such a function in MATLAB, but you can loop over your target/response variables, and each time fit a new model....

9 maanden ago | 0

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Answered
How to cluster data in a boxplot?
what about this? data = load("data.mat").data; % just a personal preference: strings are easier to work with cellCols = v...

9 maanden ago | 0

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Answered
How to force enable GPU usage in fitrgp
fitrgp does not [yet] support GPU arrays. You can easily scroll down the doc page and check "Extended Capabilities" for each fun...

11 maanden ago | 0

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Answered
Struggling to lay 2D points over a 3D scatter plot
what about hold on? hold on voc = [125, 45, 0; 140, 39, 0]; scatter3(voc(:, 1), voc(:, 2), voc(:, 3), "*") % or plot3

11 maanden ago | 0

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Answered
how to count uncommented ligns in matlab file?
% doc readlines % lines = readlines("myfunc.m"); lines = [" % comment 1" "dummy = 1 + 3;" " " "%{" "th...

11 maanden ago | 2

| accepted

Answered
Right measure for logistic regression of imbalance data and dealing with Complete Separation
It's probably a bit late for your original problem, but since it's an important question and MATLAB still lacks such important f...

meer dan een jaar ago | 0

Submitted


bfilereader
bfilereader: Efficient processing of big delimited files in MATLAB

bijna 2 jaar ago | 1 download |

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Answered
How to get the sum of squares in GLM model summary ?
You can get SST, SSE and SSR: mdl = fitglm(rand(100, 2), randi([0 1], 100, 1), 'dist', 'binomial', 'link', 'logit'); mdl.SSE...

bijna 2 jaar ago | 0

| accepted

Question


tall array within a parfor?
Consider the following scenario: ds = datastore(...); dst = tall(ds); parfor ... % warning here: dst is a broadca...

bijna 2 jaar ago | 1 answer | 0

1

answer

Answered
Sort cell numbers ?
If by sort, you mean sort within each element of cell array: G = {[-83;-84] [-65] [-50;-47] [-33;-30] [-26;-22] [-16;-15] [-6; ...

bijna 2 jaar ago | 0

Answered
Using movmean to calculate mean of first and last element in array
What about this? a = [1 5 8 10]; ma = movmean([a, a(1)], [0 1], 'Endpoints', 'discard')

bijna 2 jaar ago | 0

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Answered
exportgraphics dynamic file name
% A = {'name1', ...} for k = 1:16 %rest of the code c = colorbar; c.Label.String = A{k}; ...

bijna 2 jaar ago | 1

| accepted

Answered
stepwiseglm model seems to be missing parameters?
It does include both. You should mind the model formula in MATLAB (AKA Wilkinson Notation): x1*x2 is x1 + x2 + x1:x2. See also...

bijna 2 jaar ago | 0

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Answered
Create a double identity matrix matlab
Maybe not the best way, but works: % taken from doc kron n = 12; I = speye(n, n); E = sparse(2:n, 1:n-1, 1, n, n); K = fu...

bijna 2 jaar ago | 0

Answered
Vector dimesions are different before encoding json and after decoding json
How about this? mystr.f1 = 1:4; mystr.f2 = (1:4).'; js = jsonencode(mystr); newstr = jsondecode(js) fnames = fieldnames...

ongeveer 2 jaar ago | 0

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Answered
How do I match an annotations.json file with their respective images from an image folder?
Try this js = jsondecode(fileread("annotations.json.txt")) % file extension was changed only for upload % get info of first ...

ongeveer 2 jaar ago | 0

Answered
How to add to Matlab a path with a @Folder
See here www.mathworks.com/matlabcentral/answers/1659190-why-addpath-is-not-working?

ongeveer 2 jaar ago | 2

| accepted

Answered
Can MATLAB save the Profiler results table (Function Name, Calls, etc.) to a text file or a spreadsheet?
info = load("info.mat").info; infotab = struct2table(info.FunctionTable); infotabMain = infotab(:, ["FunctionName", "NumCalls"...

ongeveer 2 jaar ago | 0

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Answered
Estimate p-values of fitted parameters using armax from sysid toolbox
armax returns parameters and their uncertainties; then you can calculate the p-values. load iddata9 z9 na = 4; nc = 1; sys ...

ongeveer 2 jaar ago | 0

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Answered
Optimization of manipulating an array
a = [1, 0, 5, 0, 6, 0, 12, 0]; b = a; a_adj_mean = movmean(a(1:2:end), 2); zero_idx = a == 0; b(zero_idx(1:end - 1)) = a_a...

ongeveer 2 jaar ago | 0

| accepted

Answered
calculate the number of times each codon appears in a .mat file
Maybe this example would help: % create a random DNA seq dna_codes = ['A', 'T', 'G', 'C']; dna_str = string(dna_codes(randi(n...

ongeveer 2 jaar ago | 0

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