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Ben
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looping though multiple sub-directories

Asked by Ben
on 18 Jul 2019
Latest activity Commented on by Rik
on 19 Jul 2019
I would like to recursively proces files in subdirectories using MATLAB. I have three subject-specific subdirectories (sub_001, sub_002, sub_003) in a main directory, A, each of which contains a .nii file, B.
In linux, this is possible using a for loop with a .txt file containg a listing of the main directory. For example:
for i in `cat list.txt`; do mv /A/$i/B /path/to/new/destination; done
Can the same be acheived in MATLAB? Essentially, the only thing that needs to change in each iteration is the subject's directory.
Thank you,
Ben

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2 Answers

Answer by Rik
on 18 Jul 2019

Yes, you just need to load your text file with your paths, and then loop over the contents. If you need help with loading the text file, you can post an example.

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Ben
on 19 Jul 2019
I don't understand how to load the .txt file with the path. I can't find reference to this online.
Rik
on 19 Jul 2019
Reading a file is not a difficult task in Matlab. If you Google it you're bound to find dozens of examples. If you use a function like my readfile FEX submission, then you can use the resulting cell array directly in a loop.
You can also directly read all nii files with the code Jan showed you.

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Answer by Jan
on 19 Jul 2019

FileList = dir('C:\Base\Folder\**\*.nii');
for k = 1:numel(FileList)
File = fullfile(FileList(k).folder, FileList(k).name);
...
end

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