Develop a Kinetic Model
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Hi. I need to develop a running MATLAB function to get the output graph shown below using the kinetic equations below . I tried to use a function to develop the code but it doesnt give the right result
The reaction is as follows :
The reactions in the second picture are intermediate reactions.
The required output is as shown in Fig 6 (a)
Here is the function code I developed with values for rate constants (values of k ) being assumed from the paper and the output I got from that code :
function [f] = conc(~,x)
%UNTITLED4 Summary of this function goes here
% Detailed explanation goes here
dx=zeros(6,1);
%rate constant values
k1p = 4*(10^(-3));
k1m = 2.2*(10^(-17));
k2p = 7.5*(10^(-3));
k2m = 1.9*(10^(-25));
k3p = 1.3*(10^(-4));
k3m = 1.3*(10^(-10));
k4p = 3.1*(10^(-5));
k4m = 1.3*(10^(-3));
%ODES
dx(1) = -k1p*x(1)*x(2) - k2p*x(1)*x(3) + k1m*x(4) + k2m*x(5);
dx(2) = -k1p*x(1)*x(2) - k4p*x(5)*x(2) + k1m*x(4) + k4m*x(6);
dx(3) = -k2p*x(1)*x(3) - k3p*x(4)*x(3) + k2m*x(5) + k3m*x(6);
dx(4) = -k3p*x(4)*x(3) - k1m*x(4) + k3m*x(6) + k1p*x(1)*x(2);
dx(5) = -k4p*x(5)*x(2) - k2m*x(5) + k4m*x(6) + k2p*x(1)*x(3);
dx(6) = k3p*x(4)*x(3) + k4p*x(5)*x(2) -k3m*x(6) - k4m*x(6) ;
f=[dx]; %o/p
Main Code
>> [t,x] = ode15s(@conc,[0 100],[0 30 60 30 0 0]);
>> plot(t,x)
>> legend('[M]','[Q]','[T]','[MQ]','[QT]','[MQT]')
>> title(‘Kinetic Analysis’)
>> xlabel(‘Time(in seconds)’)
>> ylabel(‘Concentration(in nM)’)
I want to know what the error with the code is and also if anyone can develop a function codem that gives the required response , it would of great help
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