If the row is x you're violating a pretty strong convention of having x be the horizontal direction and y be the vertical direction.
What you have is correct:
[row,col]=find(BW3==1);
but you could also do
[y, x] = find(BW3); % Note: y comes first! It's not [x,y].
if you follow the universal convention of x being the horizontal (column) direction, and want to use x,y nomenclature instead of row, column nomenclature.
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