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Explicitly set BP/Pixel in Biological Sequence Viewer?

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David Roe
David Roe on 8 Feb 2017
Commented: Walter Roberson on 9 Feb 2017
Can the BP/Pixel in Biological Sequence Viewer be set explicitly (besides zoom in/out)? I have multiple sequences I would like to view, and I would like them to be the same scale on my screen.
Or, is there another way I can visualize two sequences and their CDSes on the same scale?


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Answers (1)

Luuk van Oosten
Luuk van Oosten on 9 Feb 2017
Dear David Roe,
I am not really sure what you mean by 'the same scale', but I assume for now multiple aligned sequences... if you mean you want to align multiple sequences, you could use the sequence alignment function.
For example:
HIVseqs = multialignread('aagag.aln');
Or something like:
Here is the accompanying documentation: seqalignviewer, which requires as input multiple aligned sequences from multialign. Or you could use showalignment to have a look at your multiple sequences.

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Walter Roberson
Walter Roberson on 9 Feb 2017
The question is about the viewer, and how many pixels wide items are represented in the graphics.

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