cpsd output vector differs from plotted result

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When using cpsd to calculate the cross power spectral density, I've noticed that the plot produced by directly running the command with no output arguments is slightly different from what I get when I run it with an output argument and plot that output myself.
The following code (attached along with example signal file) produces the figure below.
signalx = randn(2e4,1);
signaly = randn(2e4,1);
window = length(signalx)/3;
noverlap = round(0.9*window);
fs = 2074;
[Pxy,F] = cpsd(signalx,signaly,window,noverlap,[],fs);
plot(F./1000,10.*log10(real(Pxy)))
hold on
cpsd(signalx,signaly,window,noverlap,[],fs);
legend('CPSD output','CPSD direct plot')
I'm trying to run cpsd column-wise on a pair of very large matrices. Obviously I can't just plot them one by one, but I don't know how to interpret this difference and I'm not sure if I trust the output argument. Does anyone know what's going on here? Thanks!

Accepted Answer

Voss
Voss on 1 Aug 2024
Edited: Voss on 1 Aug 2024
Looks like cpsd with no outputs plots the magnitude, abs(Pxy), rather than the real part, real(Pxy).
signalx = randn(2e4,1);
signaly = randn(2e4,1);
window = length(signalx)/3;
noverlap = round(0.9*window);
fs = 2074;
[Pxy,F] = cpsd(signalx,signaly,window,noverlap,[],fs);
Warning: Rounding order to nearest integer.
% use a thick line so it can be seen underneath the thin line on top
plot(F./1000,10.*log10(abs(Pxy)),'--','LineWidth',2)
hold on
cpsd(signalx,signaly,window,noverlap,[],fs);
Warning: Rounding order to nearest integer.
legend('CPSD output','CPSD direct plot')
% zoom in to see that the lines match
xlim([0 0.01])

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