CytoMAP

See release notes for this release on GitHub: https://github.com/DrStoltzfus/CytoMAP/releases/tag/1.4.22

> added option to change overlap threshold in interaction plots
> made the fit plots in density model smoother and added overlay of fit functions
> added a try statement to load .wsp to deal with derived parameter names

> Fixed a bug in plotting neighborhoods
> Fixed calculate distance to regions so it works for CCN
> Updated logo
> Added Highlight Neighborhoods feature in figures
> Added Model Density extension

> Added option to replace missing values with numbers instead of NaNs
> Added extension to invert Y axis on all open plots
> Added extension to bin data along the X axis

> Improved loading table of cells stability
> Fixed bug in getting names of channels for neighborhoods
> Fixed bug in generation of random points for data containing strings
> Fixed bug in gating on cell types with multiple samples

> Added the option to have a beep played when a function finishes
> Stability fixes for compatibility with MATLAB 2021a
> Added *make new sample from phenotype* function to phenotype table

- Added extension for re-ordering samples
- Fixed a broken export plot data
- Group number in Cellularity plots now changes plot order
- Added support for .xls, xlsx
- Re-named file dropdown items
- Selecting multiple x axes on import finds mean

> Fixed non-cylindrical neighborhood issue for samples with thickness close to neighborhood radius
> Re-wrote merge samples to include non-conserved gates between samples
> Fixed indexing error in volume normalized cellularity plots

> Added the option to name dimensionality reduction models
> Fixed plot data export formatting issues
> Fixed some of the window names
> Made the 0 value of the red heatmap white

> Added DBSCAN to clustering options
> Fixed indexing error in regions statistics of single sample
> Updated clustering window name to include data type and model name

> Fixed color limits in neighborhood clustering output plots
> Tweaked how annotate regions auto-populates when switching between models
> Fixed issue where loading multiple samples broke if a phenotype had no cells

> Faster more stable cell-centered neighborhoods
> Bigger progress bars
> More stable plot click data tips
> Annotate clusters now pulls existing names from all samples
> Neighborhood % added to fold change in region statistics heatmap

> Plot Gates no longer fills in the points by default. (Added right click to enable)
> Fixed issues with NaNs in neighborhoods
> Import samples defaults to no Z for all samples
> Indexing fix in combined cell heatmaps
> Cluster result plots fix

> Fixed bugs in loading .csv files with mixed strings and numericals
> Added compare phenotypes to cell heatmaps extension

> Added more options to the data export functionality
> Fixed indexing problems in the Annotate Clusters GUI

> Added functionality to options button in New Figures (change point colors, invert axes etc.)
> Changed cell % cells in cluster from 0-1 to 0-100 percentages

> Annotate clusters now auto-populates names when using a string based classifier channel

> Load .csv now supports mixed numerical and string features
> Load .wsp now warns if loading a derived parameter fails

> Increased functionality of annotate regions and annotate cells
> Moved annotation extensions to the main CytoMAP GUI

> Added a select manual regions interface
> Fixed indexing bugs in region statistics

> Added annotate regions extension
> Added support for manually defined regions
> Added annotate clustered cells
> added stacked bar graphs in region statistics

fixed a bug in export csv data

Updated extensions
bug fixes

- Updated .wsp loader
- Added functionality to .ims overlay
- Added new dimensionality reduction tools

Fixed install path issue