MEAnalyzer

Version 2023.01.16 (64.1 MB) by Raha Dastgheyb

Anakyze spike trains exported from multi-electrode arrays

https://github.com/RDastgh1/MEAnalyzer

5.0

(1)

664 Downloads

Updated 29 Feb 2024

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Analyze spike train data exported from multi-electrode array recordings with advanced visualizations. Matlab not required.

This stand-alone tool gives you the ability to:

Load spike trains from a variety of electrode layouts

Select electrodes from a graphical display

Crop time segments

Calculate electrode-specific metrics for spike activity

Plot and export raster plots in publication-ready format

Plot plate-wide activity with a bin size of your choosing

Calcualte bursts based on your own burst definition

Calculate periodic intervals for plate-wide activity

Calculate and visualize network correlation activity

Export 3D visualizations and videos

All parameters are adjustable

Cite As

Raha Dastgheyb (2024). MEAnalyzer (https://github.com/RDastgh1/MEAnalyzer), GitHub. Retrieved November 21, 2024.

Dastgheyb, Raha M., et al. “MEAnalyzer – a Spike Train Analysis Tool for Multi Electrode Arrays.” Neuroinformatics, Springer Science and Business Media LLC, July 2019, doi:10.1007/s12021-019-09431-0.

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MATLAB Release Compatibility

Created with R2021a

Compatible with any release

Platform Compatibility

Windows macOS Linux

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Versions that use the GitHub default branch cannot be downloaded

Version	Published	Release Notes
2023.01.16	29 Feb 2024	Fixed bug in loading csvs
5.0	9 Mar 2022	The newest update includes a macOS version and fixes bugs with the 120 electrode layout.
4.0	23 Jul 2019	Methods Published in Neuroinformatics: https://www.ncbi.nlm.nih.gov/pubmed/31273627
3.0	26 Apr 2019	- added support for more electrode layouts - added ability to load csv spike trains with no layout associated - added more functionality for exporting figures in publication-ready format - added more functionality for voltage visualizations
1.1.02	4 Jan 2019	Fixed bug when exporting data
1.1.0	6 Nov 2018	Now reads files converted with MCS experimenter and allows for different electrode layouts
1.0.0	19 Jul 2018

To view or report issues in this GitHub add-on, visit the GitHub Repository.

MLA	Dastgheyb, Raha M., et al. “MEAnalyzer – a Spike Train Analysis Tool for Multi Electrode Arrays.” Neuroinformatics, Springer Science and Business Media LLC, July 2019, doi:10.1007/s12021-019-09431-0.
APA	Dastgheyb, R. M., Yoo, S.-W., & Haughey, N. J. (2019). MEAnalyzer – a Spike Train Analysis Tool for Multi Electrode Arrays. Neuroinformatics. Springer Science and Business Media LLC. Retrieved from https://doi.org/10.1007%2Fs12021-019-09431-0
BibTeX	@article{Dastgheyb_2019, doi = {10.1007/s12021-019-09431-0}, url = {https://doi.org/10.1007%2Fs12021-019-09431-0}, year = 2019, month = {jul}, publisher = {Springer Science and Business Media {LLC}}, author = {Raha M. Dastgheyb and Seung-Wan Yoo and Norman J. Haughey}, title = {{MEAnalyzer} {\textendash} a Spike Train Analysis Tool for Multi Electrode Arrays}, journal = {Neuroinformatics} }