pan_fit

Version 1.1.1 (162 KB) by Cengiz Gunay
Provides Pandora Toolbox module pan_fit for fitting parameters of Hodgkin-Huxley type ion channel and neuron model parameters
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Updated 31 Jan 2023
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pan_fit - Pandora Matlab toolbox module for fitting neuronal models

pan_fit is an object-oriented Matlab toolbox for fitting parameters of Hodgkin-Huxley type ion channel and neuron model parameters. It achieves this by simulating model ODEs and calculating differences to an observed waveform output. It can simulate any ODE or simple functions as well.

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Prerequisites

  • Pandora Toolbox - Get from Github or Mathworks FileExchange
  • Matlab Optimization Toolbox is used by default, but other methods can be substituted

Installation:

Use the addpath Matlab command to add the pan_fit/ subdirectory to the Matlab search path. For example:

>> addpath my/download/dir/pandora-fit-matlab-x.y.z/pan_fit

To avoid doing this every time you start Matlab in Windows, use the 'File->Set path' menu option and add the pandora/ directory to the search path. Or, create a startup.m file in the '$HOME/matlab' directory in In UNIX/Linux and 'My Documents/MATLAB' directory in Windows with the above addpath command inside.

Documentation:

See the embedded documentation that comes with each file using the Matlab help browser.

Copyright:

Copyright (c) 2010-23 Cengiz Gunay cengique@users.sf.net. This work is licensed under the Academic Free License ("AFL") v. 3.0. To view a copy of this license, please look at the COPYING file distributed with this software or visit http://opensource.org/licenses/afl-3.0.txt.

Cite As

Cengiz Gunay (2024). pan_fit (https://github.com/cengique/pandora-fit-matlab/releases/tag/1.1.1), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2022a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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@param_HH_chan_int_v

@param_act

@param_act_t

@param_func

@param_func/private

@param_func_compiled

@param_mult

@param_spline_func

@param_tau_v

@solver_int

old

unittest

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
1.1.1

See release notes for this release on GitHub: https://github.com/cengique/pandora-fit-matlab/releases/tag/1.1.1
1.1

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.