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Calculating median along specific dimension of 3D array

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Uerm on 27 Nov 2019
Commented: Uerm on 28 Nov 2019
I have a 3D array (S) of size 75x31253x1523. If I was to calculate the median along the second axis (for each row) it would be median(S,2) which would result in a 75x1x1523 array.
However, because the array is large, I run out of memory when I try to calculate the median of the whole array with one line. Therefore, I want to calculate the median in chunks. The problem is that each chunk will be of size Ax1xB. When stacking them together, they will be of size AxNxB. How can I calculate it in chunks and still end with size Ax1xB (75x1x1523)?


Stephen Cobeldick
Stephen Cobeldick on 27 Nov 2019
Check your available memory, it works when I tried it (32 bit R2012b):
>> S = randi(75,31253,1523);
>> M = median(S,2);
You might be able to increase your swap space, which although slow can be effective in avoiding such errors.
Uerm on 27 Nov 2019
Sorry, I wrote the dimensions wrong. They are 90x38021x1633. However, they are from other calculations and take up approximately 22.5 gb of space.
Can I increase the swap space when I use a mac?

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Accepted Answer

Matt J
Matt J on 28 Nov 2019
Edited: Matt J on 28 Nov 2019
for i=1:90

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