MIN1PIPE
Version 1.0.2 (25.3 MB) by
Jinghao Lu
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
MIN1PIPE is a fully automatic, Matlab-based toolbox, solving the full range problems in 1-photon calcium imaging in one package: data enhancement → movement morrection → signal extraction. It requires minimal parameter-tuning and integrates the semi-auto options. Each inidividual module can also be easily adapted for the 2-photon imaging setting.
Cite As
Jinghao Lu (2024). MIN1PIPE (https://github.com/JinghaoLu/MIN1PIPE), GitHub. Retrieved .
Lu, Jinghao, et al. “MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.” Cell Reports, vol. 23, no. 12, Elsevier BV, June 2018, pp. 3673–84, doi:10.1016/j.celrep.2018.05.062.
MATLAB Release Compatibility
Created with
R2018a
Compatible with R2018a to R2019a
Platform Compatibility
Windows macOS LinuxCategories
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utilities/CNMF
utilities/RNN
utilities/elements
utilities/movement_correction
utilities/postprocess
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Version | Published | Release Notes | |
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1.0.2 | up-to-date git version |
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1.0.1 | Full version |
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1.0.0 |
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To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.